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This happens with a lot of security tools. As long as you are downloading it from a trusted source (ie: the project website), and it's a commonly used tool, don't worry about it.
Same happens with Cain $ Abel. Although that statement from Openwall is kind of sketchy. Saying that AVs use JTR or a few other similar programs to bump their count is kind of silly as they don't need to worry about a few numbers. They already deal in the 100s to 1000s.